Package: prioritizr 8.0.5
prioritizr: Systematic Conservation Prioritization in R
Systematic conservation prioritization using mixed integer linear programming (MILP). It provides a flexible interface for building and solving conservation planning problems. Once built, conservation planning problems can be solved using a variety of commercial and open-source exact algorithm solvers. By using exact algorithm solvers, solutions can be generated that are guaranteed to be optimal (or within a pre-specified optimality gap). Furthermore, conservation problems can be constructed to optimize the spatial allocation of different management actions or zones, meaning that conservation practitioners can identify solutions that benefit multiple stakeholders. To solve large-scale or complex conservation planning problems, users should install the Gurobi optimization software (available from <https://www.gurobi.com/>) and the 'gurobi' R package (see Gurobi Installation Guide vignette for details). Users can also install the IBM CPLEX software (<https://www.ibm.com/products/ilog-cplex-optimization-studio/cplex-optimizer>) and the 'cplexAPI' R package (available at <https://github.com/cran/cplexAPI>). Additionally, the 'rcbc' R package (available at <https://github.com/dirkschumacher/rcbc>) can be used to generate solutions using the CBC optimization software (<https://github.com/coin-or/Cbc>). For further details, see Hanson et al. (2024) <doi:10.1111/cobi.14376>.
Authors:
prioritizr_8.0.5.tar.gz
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prioritizr_8.0.5.tgz(r-4.4-x86_64)prioritizr_8.0.5.tgz(r-4.4-arm64)prioritizr_8.0.5.tgz(r-4.3-x86_64)prioritizr_8.0.5.tgz(r-4.3-arm64)
prioritizr_8.0.5.tar.gz(r-4.5-noble)prioritizr_8.0.5.tar.gz(r-4.4-noble)
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prioritizr.pdf |prioritizr.html✨
prioritizr/json (API)
NEWS
# Install 'prioritizr' in R: |
install.packages('prioritizr', repos = c('https://prioritizr.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/prioritizr/prioritizr/issues
Pkgdown:https://prioritizr.net
biodiversityconservationconservation-planneroptimizationprioritizationsolverspatialcpp
Last updated 2 months agofrom:84e25c3e86. Checks:OK: 3 NOTE: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 19 2024 |
R-4.5-win-x86_64 | OK | Dec 19 2024 |
R-4.5-linux-x86_64 | OK | Dec 19 2024 |
R-4.4-win-x86_64 | NOTE | Dec 19 2024 |
R-4.4-mac-x86_64 | NOTE | Dec 19 2024 |
R-4.4-mac-aarch64 | NOTE | Dec 19 2024 |
R-4.3-win-x86_64 | NOTE | Dec 19 2024 |
R-4.3-mac-x86_64 | NOTE | Dec 19 2024 |
R-4.3-mac-aarch64 | NOTE | Dec 19 2024 |
Exports:%>%%T>%Aadd_absolute_targetsadd_asym_connectivity_penaltiesadd_binary_decisionsadd_boundary_penaltiesadd_cbc_solveradd_connected_constraintsadd_connectivity_penaltiesadd_contiguity_constraintsadd_corridor_constraintsadd_cplex_solveradd_cuts_portfolioadd_default_portfolioadd_default_solveradd_extra_portfolioadd_feature_contiguity_constraintsadd_feature_weightsadd_gap_portfolioadd_gurobi_solveradd_highs_solveradd_linear_constraintsadd_linear_penaltiesadd_locked_in_constraintsadd_locked_out_constraintsadd_loglinear_targetsadd_lpsymphony_solveradd_mandatory_allocation_constraintsadd_manual_bounded_constraintsadd_manual_locked_constraintsadd_manual_targetsadd_max_cover_objectiveadd_max_features_objectiveadd_max_phylo_div_objectiveadd_max_phylo_end_objectiveadd_max_utility_objectiveadd_min_largest_shortfall_objectiveadd_min_set_objectiveadd_min_shortfall_objectiveadd_neighbor_constraintsadd_pool_portfolioadd_proportion_decisionsadd_relative_targetsadd_rsymphony_solveradd_semicontinuous_decisionsadd_shuffle_portfolioadd_top_portfolioadjacency_matrixbinary_stackboundary_matrixbranch_matrixcategory_layercategory_vectorcol_idscompilecompressed_formulationconnected_matrixconnectivity_matrixdistribute_loadeval_asym_connectivity_summaryeval_boundary_summaryeval_connectivity_summaryeval_cost_summaryeval_feature_representation_summaryeval_ferrier_importanceeval_n_summaryeval_rare_richness_importanceeval_replacement_importanceeval_target_coverage_summaryfast_extractfeature_abundancesfeature_namesfeature_representationferrier_scoreget_number_of_threadsget_sim_featuresget_sim_locked_in_rasterget_sim_locked_out_rasterget_sim_phylogenyget_sim_pu_linesget_sim_pu_pointsget_sim_pu_polygonsget_sim_pu_rasterget_sim_zones_featuresget_sim_zones_pu_polygonsget_sim_zones_pu_rasterintersecting_unitsis.parallelknit_print.ConservationProblemknit_print.OptimizationProblemlbloglinear_interpolationmarxan_boundary_data_to_matrixmarxan_connectivity_data_to_matrixmarxan_problemmodelsensencellncolnew_optimization_problemnew_waivernrownumber_of_featuresnumber_of_planning_unitsnumber_of_total_unitsnumber_of_zonesobjoptimization_problemplotpredefined_optimization_problempresolve_checkproblemproximity_matrixrarity_weighted_richnessreplacement_costrescale_matrixrhsrij_matrixrow_idsrun_calculationssenseset_number_of_threadssimulate_costsimulate_datasimulate_speciessolve.ConservationProblemubvtypewrite_problemzone_nameszones
Dependencies:apeassertthatBHclassclassIntclicpp11DBIdigeste1071exactextractrfansiglueigraphKernSmoothlatticelifecyclemagrittrMASSMatrixnlmepillarpkgconfigproxyR6rasterRcppRcppArmadillorlangs2sfslamspterratibbleunitsutf8vctrswithrwk
Calibrating trade-offs tutorial
Rendered fromcalibrating_trade-offs_tutorial.Rmd
usingknitr::rmarkdown_notangle
on Dec 19 2024.Last update: 2024-10-20
Started: 2021-12-01
Connectivity tutorial
Rendered fromconnectivity_tutorial.Rmd
usingknitr::rmarkdown_notangle
on Dec 19 2024.Last update: 2024-10-20
Started: 2021-12-01
Getting started
Rendered fromprioritizr.Rmd
usingknitr::rmarkdown_notangle
on Dec 19 2024.Last update: 2024-10-20
Started: 2017-03-10
Gurobi installation guide
Rendered fromgurobi_installation_guide.Rmd
usingknitr::rmarkdown_notangle
on Dec 19 2024.Last update: 2024-10-20
Started: 2021-12-01
Management zones tutorial
Rendered frommanagement_zones_tutorial.Rmd
usingknitr::rmarkdown_notangle
on Dec 19 2024.Last update: 2024-10-20
Started: 2021-12-01
Package overview
Rendered frompackage_overview.Rmd
usingknitr::rmarkdown_notangle
on Dec 19 2024.Last update: 2024-10-20
Started: 2021-12-01
Publication record
Rendered frompublication_record.Rmd
usingknitr::rmarkdown_notangle
on Dec 19 2024.Last update: 2024-10-17
Started: 2017-10-31
Solver benchmarks
Rendered fromsolver_benchmarks.Rmd
usingknitr::rmarkdown_notangle
on Dec 19 2024.Last update: 2024-10-20
Started: 2021-12-01
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Add absolute targets | add_absolute_targets add_absolute_targets,ConservationProblem,character-method add_absolute_targets,ConservationProblem,matrix-method add_absolute_targets,ConservationProblem,numeric-method add_absolute_targets-method |
Add asymmetric connectivity penalties | add_asym_connectivity_penalties add_asym_connectivity_penalties,ConservationProblem,ANY,ANY,array-method add_asym_connectivity_penalties,ConservationProblem,ANY,ANY,data.frame-method add_asym_connectivity_penalties,ConservationProblem,ANY,ANY,dgCMatrix-method add_asym_connectivity_penalties,ConservationProblem,ANY,ANY,Matrix-method add_asym_connectivity_penalties,ConservationProblem,ANY,ANY,matrix-method |
Add binary decisions | add_binary_decisions |
Add boundary penalties | add_boundary_penalties add_boundary_penalties,ConservationProblem,ANY,ANY,ANY,ANY-method add_boundary_penalties,ConservationProblem,ANY,ANY,ANY,array-method add_boundary_penalties,ConservationProblem,ANY,ANY,ANY,data.frame-method add_boundary_penalties,ConservationProblem,ANY,ANY,ANY,matrix-method |
Add a _CBC_ solver | add_cbc_solver |
Add connectivity penalties | add_connectivity_penalties add_connectivity_penalties,ConservationProblem,ANY,ANY,array-method add_connectivity_penalties,ConservationProblem,ANY,ANY,data.frame-method add_connectivity_penalties,ConservationProblem,ANY,ANY,dgCMatrix-method add_connectivity_penalties,ConservationProblem,ANY,ANY,Matrix-method add_connectivity_penalties,ConservationProblem,ANY,ANY,matrix-method |
Add contiguity constraints | add_contiguity_constraints add_contiguity_constraints,ConservationProblem,ANY,ANY-method add_contiguity_constraints,ConservationProblem,ANY,data.frame-method add_contiguity_constraints,ConservationProblem,ANY,matrix-method |
Add a _CPLEX_ solver | add_cplex_solver |
Add Bender's cuts portfolio | add_cuts_portfolio |
Add a default portfolio | add_default_portfolio |
Add default solver | add_default_solver |
Add an extra portfolio | add_extra_portfolio |
Add feature contiguity constraints | add_feature_contiguity_constraints add_feature_contiguity_constraints,ConservationProblem,ANY,ANY-method add_feature_contiguity_constraints,ConservationProblem,ANY,data.frame-method add_feature_contiguity_constraints,ConservationProblem,ANY,Matrix-method add_feature_contiguity_constraints,ConservationProblem,ANY,matrix-method |
Add feature weights | add_feature_weights add_feature_weights,ConservationProblem,matrix-method add_feature_weights,ConservationProblem,numeric-method |
Add a gap portfolio | add_gap_portfolio |
Add a _Gurobi_ solver | add_gurobi_solver |
Add a _HiGHS_ solver | add_highs_solver |
Add linear constraints | add_linear_constraints add_linear_constraints,ConservationProblem,ANY,ANY,character-method add_linear_constraints,ConservationProblem,ANY,ANY,dgCMatrix-method add_linear_constraints,ConservationProblem,ANY,ANY,Matrix-method add_linear_constraints,ConservationProblem,ANY,ANY,matrix-method add_linear_constraints,ConservationProblem,ANY,ANY,numeric-method add_linear_constraints,ConservationProblem,ANY,ANY,Raster-method add_linear_constraints,ConservationProblem,ANY,ANY,SpatRaster-method |
Add linear penalties | add_linear_penalties add_linear_penalties,ConservationProblem,ANY,character-method add_linear_penalties,ConservationProblem,ANY,dgCMatrix-method add_linear_penalties,ConservationProblem,ANY,Matrix-method add_linear_penalties,ConservationProblem,ANY,matrix-method add_linear_penalties,ConservationProblem,ANY,numeric-method add_linear_penalties,ConservationProblem,ANY,Raster-method add_linear_penalties,ConservationProblem,ANY,SpatRaster-method |
Add locked in constraints | add_locked_in_constraints add_locked_in_constraints,ConservationProblem,character-method add_locked_in_constraints,ConservationProblem,logical-method add_locked_in_constraints,ConservationProblem,matrix-method add_locked_in_constraints,ConservationProblem,numeric-method add_locked_in_constraints,ConservationProblem,Raster-method add_locked_in_constraints,ConservationProblem,sf-method add_locked_in_constraints,ConservationProblem,Spatial-method add_locked_in_constraints,ConservationProblem,SpatRaster-method |
Add locked out constraints | add_locked_out_constraints add_locked_out_constraints,ConservationProblem,character-method add_locked_out_constraints,ConservationProblem,logical-method add_locked_out_constraints,ConservationProblem,matrix-method add_locked_out_constraints,ConservationProblem,numeric-method add_locked_out_constraints,ConservationProblem,Raster-method add_locked_out_constraints,ConservationProblem,sf-method add_locked_out_constraints,ConservationProblem,Spatial-method add_locked_out_constraints,ConservationProblem,SpatRaster-method |
Add targets using log-linear scaling | add_loglinear_targets |
Add a _SYMPHONY_ solver with _lpsymphony_ | add_lpsymphony_solver add_lsymphony_solver |
Add mandatory allocation constraints | add_mandatory_allocation_constraints |
Add manually specified bound constraints | add_manual_bounded_constraints add_manual_bounded_constraints,ConservationProblem,data.frame-method add_manual_bounded_constraints,ConservationProblem,tbl_df-method |
Add manually specified locked constraints | add_manual_locked_constraints add_manual_locked_constraints,ConservationProblem,data.frame-method add_manual_locked_constraints,ConservationProblem,tbl_df-method |
Add manual targets | add_manual_targets add_manual_targets,ConservationProblem,data.frame-method add_manual_targets,ConservationProblem,tbl_df-method add_manual_targets-method |
Add maximum coverage objective | add_max_cover_objective |
Add maximum feature representation objective | add_max_features_objective |
Add maximum phylogenetic diversity objective | add_max_phylo_div_objective add_max_phylo_objective |
Add maximum phylogenetic endemism objective | add_max_phylo_end_objective |
Add maximum utility objective | add_max_utility_objective |
Add minimum largest shortfall objective | add_min_largest_shortfall_objective |
Add minimum set objective | add_min_set_objective |
Add minimum shortfall objective | add_min_shortfall_objective |
Add neighbor constraints | add_neighbor_constraints add_neighbor_constraints,ConservationProblem,ANY,ANY,ANY,ANY-method add_neighbor_constraints,ConservationProblem,ANY,ANY,ANY,array-method add_neighbor_constraints,ConservationProblem,ANY,ANY,ANY,data.frame-method add_neighbor_constraints,ConservationProblem,ANY,ANY,ANY,matrix-method |
Add proportion decisions | add_proportion_decisions |
Add relative targets | add_relative_targets add_relative_targets,ConservationProblem,character-method add_relative_targets,ConservationProblem,matrix-method add_relative_targets,ConservationProblem,numeric-method add_relative_targets-method |
Add a _SYMPHONY_ solver with _Rsymphony_ | add_rsymphony_solver |
Add semi-continuous decisions | add_semicontinuous_decisions |
Add a shuffle portfolio | add_shuffle_portfolio |
Add a top portfolio | add_top_portfolio |
Adjacency matrix | adjacency_matrix adjacency_matrix.default adjacency_matrix.Raster adjacency_matrix.sf adjacency_matrix.SpatialLines adjacency_matrix.SpatialPoints adjacency_matrix.SpatialPolygons adjacency_matrix.SpatRaster |
Binary stack | binary_stack binary_stack.Raster binary_stack.SpatRaster |
Boundary matrix | boundary_matrix boundary_matrix.default boundary_matrix.Raster boundary_matrix.sf boundary_matrix.SpatialLines boundary_matrix.SpatialPoints boundary_matrix.SpatialPolygons boundary_matrix.SpatRaster |
Branch matrix | branch_matrix branch_matrix.default branch_matrix.phylo |
Category layer | category_layer category_layer.default category_layer.Raster |
Category vector | category_vector category_vector.data.frame category_vector.matrix category_vector.sf category_vector.Spatial |
Compile a problem | compile compile.ConservationProblem |
Connectivity matrix | connectivity_matrix connectivity_matrix,Raster,Raster-method connectivity_matrix,sf,character-method connectivity_matrix,sf,Raster-method connectivity_matrix,sf,SpatRaster-method connectivity_matrix,Spatial,character-method connectivity_matrix,Spatial,Raster-method connectivity_matrix,SpatRaster,SpatRaster-method |
Conservation problem modifier class | ConservationModifier ConservationModifier-class |
Conservation problem class | ConservationProblem ConservationProblem-class |
Constraint class | Constraint Constraint-class |
Conservation problem constraints | constraints |
Decision class | Decision Decision-class |
Add decision types | decisions |
Evaluate asymmetric connectivity of solution | eval_asym_connectivity_summary eval_asym_connectivity_summary,ConservationProblem,ANY,ANY,array-method eval_asym_connectivity_summary,ConservationProblem,ANY,ANY,data.frame-method eval_asym_connectivity_summary,ConservationProblem,ANY,ANY,dgCMatrix-method eval_asym_connectivity_summary,ConservationProblem,ANY,ANY,Matrix-method eval_asym_connectivity_summary,ConservationProblem,ANY,ANY,matrix-method |
Evaluate boundary length of solution | eval_boundary_summary |
Evaluate connectivity of solution | eval_connectivity_summary eval_connectivity_summary,ConservationProblem,ANY,ANY,array-method eval_connectivity_summary,ConservationProblem,ANY,ANY,data.frame-method eval_connectivity_summary,ConservationProblem,ANY,ANY,dgCMatrix-method eval_connectivity_summary,ConservationProblem,ANY,ANY,Matrix-method eval_connectivity_summary,ConservationProblem,ANY,ANY,matrix-method |
Evaluate cost of solution | eval_cost_summary |
Evaluate feature representation by solution | eval_feature_representation_summary |
Evaluate solution importance using Ferrier scores | eval_ferrier_importance eval_ferrier_importance,ConservationProblem,data.frame-method eval_ferrier_importance,ConservationProblem,matrix-method eval_ferrier_importance,ConservationProblem,numeric-method eval_ferrier_importance,ConservationProblem,Raster-method eval_ferrier_importance,ConservationProblem,sf-method eval_ferrier_importance,ConservationProblem,Spatial-method eval_ferrier_importance,ConservationProblem,SpatRaster-method |
Evaluate number of planning units selected by solution | eval_n_summary |
Evaluate solution importance using rarity weighted richness scores | eval_rare_richness_importance eval_rare_richness_importance,ConservationProblem,data.frame-method eval_rare_richness_importance,ConservationProblem,matrix-method eval_rare_richness_importance,ConservationProblem,numeric-method eval_rare_richness_importance,ConservationProblem,Raster-method eval_rare_richness_importance,ConservationProblem,sf-method eval_rare_richness_importance,ConservationProblem,Spatial-method eval_rare_richness_importance,ConservationProblem,SpatRaster-method |
Evaluate solution importance using replacement cost scores | eval_replacement_importance eval_replacement_importance,ConservationProblem,data.frame-method eval_replacement_importance,ConservationProblem,matrix-method eval_replacement_importance,ConservationProblem,numeric-method eval_replacement_importance,ConservationProblem,Raster-method eval_replacement_importance,ConservationProblem,sf-method eval_replacement_importance,ConservationProblem,Spatial-method eval_replacement_importance,ConservationProblem,SpatRaster-method |
Evaluate target coverage by solution | eval_target_coverage_summary eval_target_coverage_summary,ConservationProblem,data.frame-method eval_target_coverage_summary,ConservationProblem,matrix-method eval_target_coverage_summary,ConservationProblem,numeric-method eval_target_coverage_summary,ConservationProblem,Raster-method eval_target_coverage_summary,ConservationProblem,sf-method eval_target_coverage_summary,ConservationProblem,Spatial-method eval_target_coverage_summary,ConservationProblem,SpatRaster-method |
Fast extract | fast_extract fast_extract,Raster,sf-method fast_extract,Raster,sfc-method fast_extract,Raster,Spatial-method fast_extract,SpatRaster,sf-method fast_extract,SpatRaster,sfc-method fast_extract,SpatRaster,Spatial-method |
Feature abundances | feature_abundances feature_abundances.ConservationProblem |
Feature names | feature_names feature_names.ConservationProblem feature_names.ZonesCharacter feature_names.ZonesRaster feature_names.ZonesSpatRaster |
Evaluate solution importance | importance irreplaceability |
Find intersecting units | intersecting_units intersecting_units,ANY,Raster-method intersecting_units,ANY,Spatial-method intersecting_units,data.frame,ANY-method intersecting_units,Raster,ANY-method intersecting_units,sf,sf-method intersecting_units,sf,SpatRaster-method intersecting_units,Spatial,ANY-method intersecting_units,SpatRaster,sf-method intersecting_units,SpatRaster,SpatRaster-method |
Print an object for knitr package. | knit_print knit_print.ConservationProblem knit_print.OptimizationProblem |
Log-linear interpolation | loglinear_interpolation |
Convert _Marxan_ boundary data to matrix format | marxan_boundary_data_to_matrix |
Convert _Marxan_ connectivity data to matrix format | marxan_connectivity_data_to_matrix |
_Marxan_ conservation problem | marxan_problem marxan_problem.character marxan_problem.data.frame marxan_problem.default |
Waiver | new_waiver |
Number of features | number_of_features number_of_features.ConservationProblem number_of_features.OptimizationProblem number_of_features.ZonesCharacter number_of_features.ZonesRaster number_of_features.ZonesSpatRaster |
Number of planning units | number_of_planning_units number_of_planning_units.ConservationProblem number_of_planning_units.OptimizationProblem |
Number of total units | number_of_total_units number_of_total_units.ConservationProblem |
Number of zones | number_of_zones number_of_zones.ConservationProblem number_of_zones.OptimizationProblem number_of_zones.ZonesCharacter number_of_zones.ZonesRaster number_of_zones.ZonesSpatRaster |
Objective class | Objective Objective-class |
Add an objective | objectives |
Optimization problem | optimization_problem |
Optimization problem class | OptimizationProblem OptimizationProblem-class |
Optimization problem methods | A A,OptimizationProblem-method col_ids col_ids,OptimizationProblem-method compressed_formulation compressed_formulation,OptimizationProblem-method lb lb,OptimizationProblem-method modelsense modelsense,OptimizationProblem-method ncell,OptimizationProblem-method ncol,OptimizationProblem-method nrow,OptimizationProblem-method obj obj,OptimizationProblem-method OptimizationProblem-methods rhs rhs,OptimizationProblem-method row_ids row_ids,OptimizationProblem-method sense sense,OptimizationProblem-method ub ub,OptimizationProblem-method vtype vtype,OptimizationProblem-method |
Add a penalty | penalties |
Penalty class | Penalty Penalty-class |
Portfolio class | Portfolio Portfolio-class |
Add portfolios | portfolios |
Presolve check | presolve_check presolve_check.ConservationProblem presolve_check.OptimizationProblem |
prioritizr: Systematic Conservation Prioritization in R | prioritizr-package prioritizr |
Deprecation notice | add_connected_constraints add_corridor_constraints add_pool_portfolio connected_matrix distribute_load feature_representation ferrier_score get_number_of_threads is.parallel new_optimization_problem predefined_optimization_problem prioritizr-deprecated rarity_weighted_richness replacement_cost set_number_of_threads |
Conservation planning problem | problem problem,data.frame,character-method problem,data.frame,data.frame-method problem,data.frame,ZonesCharacter-method problem,matrix,data.frame-method problem,numeric,data.frame-method problem,Raster,Raster-method problem,Raster,ZonesRaster-method problem,sf,character-method problem,sf,Raster-method problem,sf,SpatRaster-method problem,sf,ZonesCharacter-method problem,sf,ZonesRaster-method problem,sf,ZonesSpatRaster-method problem,Spatial,character-method problem,Spatial,Raster-method problem,Spatial,ZonesCharacter-method problem,Spatial,ZonesRaster-method problem,SpatRaster,SpatRaster-method problem,SpatRaster,ZonesRaster-method problem,SpatRaster,ZonesSpatRaster-method |
Proximity matrix | proximity_matrix proximity_matrix.default proximity_matrix.Raster proximity_matrix.sf proximity_matrix.SpatialLines proximity_matrix.SpatialPoints proximity_matrix.SpatialPolygons proximity_matrix.SpatRaster |
Rescale a matrix | rescale_matrix |
Feature by planning unit matrix | rij_matrix rij_matrix,Raster,Raster-method rij_matrix,sf,Raster-method rij_matrix,sf,SpatRaster-method rij_matrix,Spatial,Raster-method rij_matrix,SpatRaster,SpatRaster-method |
Run calculations | run_calculations |
Show | show show,ConservationModifier-method show,ConservationProblem-method show,Id-method show,OptimizationProblem-method show,Solver-method |
Get simulated conservation planning data | get_sim_features get_sim_locked_in_raster get_sim_locked_out_raster get_sim_phylogeny get_sim_pu_lines get_sim_pu_points get_sim_pu_polygons get_sim_pu_raster get_sim_zones_features get_sim_zones_pu_polygons get_sim_zones_pu_raster sim_data sim_features sim_locked_in_raster sim_locked_out_raster sim_phylogeny sim_pu_lines sim_pu_points sim_pu_polygons sim_pu_raster sim_zones_features sim_zones_pu_polygons sim_zones_pu_raster |
Simulate cost data | simulate_cost simulate_cost.Raster simulate_cost.SpatRaster |
Simulate data | simulate_data simulate_data.Raster simulate_data.SpatRaster |
Simulate species habitat suitability data | simulate_species simulate_species.Raster simulate_species.SpatRaster |
Solve | solve solve.ConservationProblem |
Solver class | Solver Solver-class |
Add solvers | solvers |
Evaluate solutions using summary statistics | summaries |
Target class | Target Target-class |
Add representation targets | targets |
Manipulate tibbles | as.list,tbl_df-method ncol,tbl_df-method nrow,tbl_df-method tibble-methods |
Write problem | write_problem |
Zone names | zone_names zone_names.ConservationProblem zone_names.ZonesCharacter zone_names.ZonesRaster zone_names.ZonesSpatRaster |
Management zones | Zones zones Zones-class ZonesCharacter ZonesRaster ZonesSpatRaster |